Teaming with Microbes, The Organic Gardener’s Guide to the Soil Food Web (Revised Edition) by Jeff Lowenfels and Wayne Lewis. Timber Press, 2010.
Unseen, plants are as busy underground as above ground. The authors of this book show that underground, the roots sweat (exudate) as a result of photosynthesis. The rhizophere, the area around the sweating roots, attracts and feeds fungus and bacteria, which in turn are consumed by larger organisms, and on up the food chain. All of these organisms, fungus, bacteria and the critters that eat them and the critters that eat them, excrete wastes. This is what is taken up by the roots as nutrients. All of this activity keeps nutrients from draining from the soil because the nutrients that plants need are bound up in the bodies of the soil life. This is called nutrient immobilization.
An empty, ‘new’ garden becoming populated with plants favors bacteria. As the plants age, more fungus appears. It is interesting to note that the bacteria count in a sample of soil over time remains the same, but the fungus count becomes more abundant.